Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2615Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (321 aa)    
Predicted Functional Partners:
CSCA_2613
ABC transporter permease.
 
 
 0.984
CSCA_2614
ABC transporter ATPase.
 
 
 0.963
CSCA_1010
Protein of unknown function DUF214.
 
 
 0.950
CSCA_3581
Protein of unknown function DUF214.
 
 
 0.950
CSCA_1009
ABC transporter related protein.
 
 
 0.885
CSCA_3582
ABC transporter related protein.
 
 
 0.884
CSCA_1008
Efflux transporter, RND family, MFP subunit.
  
     0.725
CSCA_3460
ABC transporter.
 
 
 0.713
CSCA_1072
Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.637
CSCA_0390
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.636
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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