Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_2722SPP1 family phage portal protein. (468 aa)    
Predicted Functional Partners:
CSCA_2723
Phage terminase, large subunit, pbsx family.
 
  
 0.909
CSCA_2724
Hypothetical protein.
 
  
 0.877
CSCA_2721
Putative phage scaffold protein.
 
   
 0.840
CSCA_1413
Prophage head protein.
 
     0.785
CSCA_3016
Putative phage scaffold protein.
 
   
 0.782
CSCA_1422
Hypothetical protein.
 
    0.775
CSCA_4840
Phage head morphogenesis protein, SPP1 gp7 family.
 
     0.770
CSCA_2715
Hypothetical protein.
 
   
 0.755
CSCA_2714
Phage-like element pbsx protein XkdK.
 
  
 0.752
CSCA_2719
Hypothetical protein.
 
     0.748
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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