Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2771Sporulation protein, YlmC/YmxH family. (90 aa)    
Predicted Functional Partners:
CSCA_4393
Hypothetical protein.
  
    0.750
CSCA_2772
Peptidase M16 domain protein; Belongs to the peptidase M16 family.
 
    0.747
CSCA_0798
Hypothetical protein.
  
     0.671
CSCA_2769
Peptidase S14 ClpP.
     
 0.668
CSCA_3222
Peptidase M16 domain protein.
 
    0.668
CSCA_2770
Aspartate kinase; Belongs to the aspartokinase family.
     
 0.667
CSCA_4751
Putative sporulation protein YtxC.
  
   
 0.661
CSCA_4683
Hypothetical protein.
  
     0.625
CSCA_4005
Hypothetical protein.
  
     0.621
CSCA_4778
TPR repeat-containing protein.
  
     0.620
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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