Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_2799Protein of unknown function UPF0102; Belongs to the UPF0102 family. (122 aa)    
Predicted Functional Partners:
CSCA_2798
Mg chelatase, subunit ChlI.
 
  
 0.864
CSCA_3733
Mg chelatase, subunit ChlI.
 
  
 0.787
CSCA_2795
DNA protecting protein DprA.
 
  
 0.769
CSCA_3899
Hypothetical protein.
 
    0.743
CSCA_3731
DNA protecting protein DprA.
 
  
 0.687
CSCA_3732
DNA protecting protein DprA.
 
  
 0.658
CSCA_4382
Signal transduction protein.
   
    0.524
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
     0.519
CSCA_3549
ComEC/Rec2-related protein.
  
    0.499
CSCA_0500
Cytochrome c biogenesis protein transmembrane region.
  
    0.493
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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