Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_2859PAS domain S-box domain-containing protein. (566 aa)    
Predicted Functional Partners:
CSCA_2860
Two component transcriptional regulator, winged helix family.
 
 0.994
CSCA_0433
Two component transcriptional regulator, winged helix family.
 
 0.977
CSCA_1862
Two component transcriptional regulator, winged helix family.
 
 0.967
CSCA_2361
Transcriptional regulator.
 
 0.953
CSCA_0774
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein.
 
 
0.931
CSCA_0432
PAS/PAC sensor signal transduction histidine kinase.
  
  
 
0.915
CSCA_0184
Two component transcriptional regulator, winged helix family.
 
 
 0.727
CSCA_4224
Two component transcriptional regulator, winged helix family.
 
 
 0.711
CSCA_1020
Two component transcriptional regulator, winged helix family.
 
 
 0.708
CSCA_2861
Protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.707
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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