fit to screen
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2872Twitching motility protein. (357 aa)    
Predicted Functional Partners:
CSCA_3092
Type II secretion system protein.
 
  
 0.873
CSCA_4604
Peptidase A24A domain protein.
 
   
 0.862
CSCA_3093
Hypothetical protein.
 
  
0.612
CSCA_2873
RNA polymerase, sigma 28 subunit, SigK; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.596
CSCA_0875
Diguanylate cyclase (GGDEF) domain protein.
  
  
 0.595
CSCA_3852
CinA domain protein; Belongs to the CinA family.
     
 0.546
CSCA_2874
Penicillin-binding protein transpeptidase.
       0.500
CSCA_1658
Chorismate mutase.
     
 0.473
udk
Uridine kinase.
       0.464
CSCA_1760
Multi-sensor hybrid histidine kinase.
     
 0.460
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.