Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2876Peptidase U32. (406 aa)    
Predicted Functional Partners:
CSCA_2877
O-methyltransferase family 3.
 
  
 0.945
udk
Uridine kinase.
  
    0.840
CSCA_0811
NADH dehydrogenase (quinone).
  
   0.710
CSCA_2650
NADH dehydrogenase (quinone).
  
   0.710
CSCA_4946
NADH dehydrogenase (quinone).
  
   0.695
CSCA_2874
Penicillin-binding protein transpeptidase.
       0.653
CSCA_2878
GTP-binding protein TypA.
  
    0.633
CSCA_2873
RNA polymerase, sigma 28 subunit, SigK; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.532
CSCA_2879
Hypothetical protein; Belongs to the UPF0342 family.
       0.503
CSCA_0814
UBA/THIF-type NAD/FAD binding protein.
  
     0.485
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.