Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
CSCA_2877O-methyltransferase family 3. (215 aa)    
Predicted Functional Partners:
CSCA_2876
Peptidase U32.
 
  
 0.945
udk
Uridine kinase.
  
    0.833
CSCA_2328
Peptidase U32.
 
  
 0.722
CSCA_4735
Peptidase U32.
  
  
 0.669
CSCA_4768
Peptidase U32.
  
  
 0.669
CSCA_2878
GTP-binding protein TypA.
  
  
 0.664
CSCA_2874
Penicillin-binding protein transpeptidase.
       0.653
CSCA_2329
Hypothetical protein.
  
  
 0.638
CSCA_3532
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
  
    0.571
CSCA_1658
Chorismate mutase.
     
 0.541
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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