Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2879Hypothetical protein; Belongs to the UPF0342 family. (116 aa)    
Predicted Functional Partners:
rnj
Beta-lactamase domain protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.678
CSCA_2878
GTP-binding protein TypA.
       0.620
CSCA_2881
Ferric uptake regulator, Fur family; Belongs to the Fur family.
       0.538
CSCA_2206
ATPase associated with various cellular activities AAA_5.
  
     0.515
CSCA_2876
Peptidase U32.
       0.503
CSCA_2877
O-methyltransferase family 3.
       0.503
CSCA_2884
Protein of unknown function DUF965; Belongs to the UPF0297 family.
 
     0.480
udk
Uridine kinase.
       0.470
CSCA_2883
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.447
CSCA_2882
Protein of unknown function DUF1292; Belongs to the UPF0473 family.
 
     0.436
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.