Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSCA_2882Protein of unknown function DUF1292; Belongs to the UPF0473 family. (88 aa)    
Predicted Functional Partners:
CSCA_2883
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.840
CSCA_3328
Hypothetical protein.
  
     0.641
CSCA_2881
Ferric uptake regulator, Fur family; Belongs to the Fur family.
  
    0.637
CSCA_2884
Protein of unknown function DUF965; Belongs to the UPF0297 family.
  
  
 0.625
CSCA_0129
Membrane protein of unknown function.
  
     0.524
CSCA_4395
Putative transcriptional regulator, CopG family.
  
     0.505
CSCA_0084
Hypothetical protein.
  
     0.485
CSCA_2187
Hypothetical protein.
  
     0.480
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.444
CSCA_1365
GCN5-related N-acetyltransferase.
  
     0.443
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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