CSCA_2913 protein (Clostridium scatologenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CSCA_2913

Extracellular solute-binding protein family 3. (279 aa)

Predicted Functional Partners:

CSCA_2914

0.991

CSCA_2915

0.988

CSCA_0250

0.970

CSCA_0252

0.876

CSCA_3662

0.875

CSCA_0249

0.873

CSCA_5000

0.857

CSCA_3661

0.855

CSCA_1843

0.854

CSCA_1842

0.852

Your Current Organism:

Clostridium scatologenes

NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CSCA_0249	CSCA_0250	L-cystine ABC transporter, permease.	Polar amino acid ABC transporter ATP-binding protein.	0.995
CSCA_0249	CSCA_0252	L-cystine ABC transporter, permease.	Amino acid ABC-type transporter, permease component.	0.931
CSCA_0249	CSCA_1842	L-cystine ABC transporter, permease.	Polar amino acid ABC transporter, inner membrane subunit.	0.513
CSCA_0249	CSCA_1843	L-cystine ABC transporter, permease.	ABC transporter related protein.	0.935
CSCA_0249	CSCA_2913	L-cystine ABC transporter, permease.	Extracellular solute-binding protein family 3.	0.873
CSCA_0249	CSCA_2914	L-cystine ABC transporter, permease.	Polar amino acid ABC transporter, inner membrane subunit.	0.468
CSCA_0249	CSCA_2915	L-cystine ABC transporter, permease.	Polar amino acid ABC transporter ATPase.	0.934
CSCA_0249	CSCA_3661	L-cystine ABC transporter, permease.	ABC transporter related protein.	0.936
CSCA_0249	CSCA_3662	L-cystine ABC transporter, permease.	Polar amino acid ABC transporter, inner membrane subunit.	0.402
CSCA_0249	CSCA_5000	L-cystine ABC transporter, permease.	Amino acid ABC transporter permease.	0.468
CSCA_0250	CSCA_0249	Polar amino acid ABC transporter ATP-binding protein.	L-cystine ABC transporter, permease.	0.995
CSCA_0250	CSCA_0252	Polar amino acid ABC transporter ATP-binding protein.	Amino acid ABC-type transporter, permease component.	0.996
CSCA_0250	CSCA_1842	Polar amino acid ABC transporter ATP-binding protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.959
CSCA_0250	CSCA_2913	Polar amino acid ABC transporter ATP-binding protein.	Extracellular solute-binding protein family 3.	0.970
CSCA_0250	CSCA_2914	Polar amino acid ABC transporter ATP-binding protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.986
CSCA_0250	CSCA_2915	Polar amino acid ABC transporter ATP-binding protein.	Polar amino acid ABC transporter ATPase.	0.902
CSCA_0250	CSCA_3662	Polar amino acid ABC transporter ATP-binding protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.943
CSCA_0250	CSCA_5000	Polar amino acid ABC transporter ATP-binding protein.	Amino acid ABC transporter permease.	0.938
CSCA_0252	CSCA_0249	Amino acid ABC-type transporter, permease component.	L-cystine ABC transporter, permease.	0.931
CSCA_0252	CSCA_0250	Amino acid ABC-type transporter, permease component.	Polar amino acid ABC transporter ATP-binding protein.	0.996

page 1 of 5

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About