STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2913Extracellular solute-binding protein family 3. (279 aa)    
Predicted Functional Partners:
CSCA_2914
Polar amino acid ABC transporter, inner membrane subunit.
 0.991
CSCA_2915
Polar amino acid ABC transporter ATPase.
 
 0.989
CSCA_0250
Polar amino acid ABC transporter ATP-binding protein.
 
 0.972
CSCA_0252
Amino acid ABC-type transporter, permease component.
 
 0.875
CSCA_3662
Polar amino acid ABC transporter, inner membrane subunit.
 
 0.874
CSCA_0249
L-cystine ABC transporter, permease.
 
 0.869
CSCA_5000
Amino acid ABC transporter permease.
 
 0.868
CSCA_3661
ABC transporter related protein.
 
 
 0.866
CSCA_1843
ABC transporter related protein.
 
 
 0.864
CSCA_1842
Polar amino acid ABC transporter, inner membrane subunit.
 
 0.862
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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