Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_2928Cell wall hydrolase/autolysin. (314 aa)    
Predicted Functional Partners:
CSCA_3699
Rhomboid family protein.
   
 
 0.653
CSCA_3908
Stage II sporulation protein D.
 
  
 0.583
CSCA_4796
Transmembrane NLP/P60 family protein.
  
  
 0.547
CSCA_0999
NlpC/P60 family protein.
  
  
 0.500
CSCA_1547
NLP/P60 protein.
  
  
 0.500
CSCA_4032
NLP/P60 protein.
  
  
 0.500
CSCA_5121
CHAP domain containing protein.
     
 0.498
CSCA_3573
5'-Nucleotidase domain protein.
 
   
 0.496
CSCA_2731
Cell wall hydrolase SleB.
  
  
 0.489
CSCA_2652
Putative stage V sporulation protein D.
  
  
 0.482
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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