Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2956SpoVR family protein. (455 aa)    
Predicted Functional Partners:
CSCA_2957
Sporulation protein YhbH; Belongs to the UPF0229 family.
 
  
 0.996
CSCA_2958
Putative serine protein kinase, PrkA.
 
  
 0.996
CSCA_3442
Hypothetical protein.
   
    0.582
CSCA_3906
Sporulation transcriptional regulator SpoIIID.
   
  
 0.543
CSCA_5107
PhoH family protein.
   
    0.509
CSCA_2506
Barstar (barnase inhibitor).
   
    0.504
CSCA_2848
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
   
  
 0.496
CSCA_2959
Ornithine cyclodeaminase.
     
 0.452
CSCA_1667
Hydrogenase accessory protein HypB.
      
 0.425
CSCA_2982
Stage II sporulation protein M.
  
   
 0.420
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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