Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_2957Sporulation protein YhbH; Belongs to the UPF0229 family. (404 aa)    
Predicted Functional Partners:
CSCA_2956
SpoVR family protein.
 
  
 0.996
CSCA_2958
Putative serine protein kinase, PrkA.
 
  
 0.996
CSCA_5107
PhoH family protein.
   
    0.579
CSCA_3955
Spore coat protein, CotS family.
  
  
 0.542
CSCA_0059
2,5-didehydrogluconate reductase.
  
    0.452
CSCA_4693
Single-strand binding family protein.
   
    0.436
CSCA_4609
Two component regulator three Y domain protein.
   
    0.429
CSCA_2959
Ornithine cyclodeaminase.
       0.418
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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