Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_2976Sporulation protein YtfJ. (157 aa)    
Predicted Functional Partners:
CSCA_2975
Hypothetical protein.
  
    0.885
CSCA_3906
Sporulation transcriptional regulator SpoIIID.
  
  
 0.836
CSCA_4343
Cell wall hydrolase SleB.
  
  
 0.834
CSCA_2863
Sporulation protein, YlmC/YmxH family.
  
  
 0.787
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.785
CSCA_2848
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
    0.773
CSCA_3059
Stage IV sporulation protein B.
  
    0.769
CSCA_4230
Transcriptional regulator, AbrB family.
  
   
 0.755
CSCA_2769
Peptidase S14 ClpP.
  
    0.749
CSCA_3076
Stage III sporulation protein AE.
  
     0.745
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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