Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_2980Integrase family protein; Belongs to the 'phage' integrase family. (271 aa)    
Predicted Functional Partners:
CSCA_1392
Integrase/recombinase (XerC/CodV family).
  
     0.774
CSCA_2982
Stage II sporulation protein M.
  
    0.712
CSCA_2981
Hypothetical protein.
       0.586
CSCA_2768
Cell division FtsK/SpoIIIE.
 
   
 0.557
CSCA_2979
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
       0.514
CSCA_2983
NUDIX hydrolase.
  
    0.497
CSCA_3899
Hypothetical protein.
   
    0.482
rpmI
Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
 
   0.445
CSCA_1662
Prephenate dehydrogenase.
  
    0.444
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
 
  
 0.443
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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