Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSCA_3057DNA integration/recombination protein; Belongs to the 'phage' integrase family. (338 aa)    
Predicted Functional Partners:
CSCA_1392
Integrase/recombinase (XerC/CodV family).
  
     0.773
CSCA_3056
Hypothetical protein.
       0.773
CSCA_2447
Site-specific recombinase, phage integrase family.
  
     0.771
CSCA_1288
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
  
     0.717
CSCA_2768
Cell division FtsK/SpoIIIE.
 
   
 0.632
CSCA_3058
Sporulation transcriptional activator Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
     
 0.516
CSCA_3899
Hypothetical protein.
   
    0.482
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
 
  
 0.467
CSCA_1662
Prephenate dehydrogenase.
  
    0.444
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
   
    0.427
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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