Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3078Stage III sporulation protein AC. (65 aa)    
Predicted Functional Partners:
CSCA_3077
Stage III sporulation protein AD.
 
  
 0.987
CSCA_3079
Stage III sporulation protein AB.
 
  
 0.986
CSCA_3076
Stage III sporulation protein AE.
 
  
 0.984
CSCA_3080
Stage III sporulation protein AA.
 
  
 0.983
CSCA_3074
Stage III sporulation protein AG.
 
  
 0.946
CSCA_3075
Stage III sporulation protein AF.
 
  
 0.927
CSCA_3906
Sporulation transcriptional regulator SpoIIID.
  
  
 0.861
CSCA_3073
Hypothetical protein.
 
  
 0.858
CSCA_2848
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.854
CSCA_3541
Stage II sporulation protein P.
  
  
 0.845
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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