Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_3145Flagellar operon protein. (128 aa)    
Predicted Functional Partners:
CSCA_3144
Protein of unknown function DUF1078 domain protein.
 
    0.896
CSCA_3146
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
 
    0.893
CSCA_3154
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
    0.856
CSCA_3155
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
    0.846
CSCA_3151
Flagellar motor switch protein FliG.
 
    0.828
CSCA_3147
Flagellar hook-length control protein.
  
    0.824
CSCA_3149
ATPase FliI/YscN.
 
    0.778
CSCA_3152
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
    0.778
fliE
Flagellar hook-basal body complex subunit FliE.
 
    0.769
CSCA_3150
Hypothetical protein.
  
    0.757
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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