Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3161Ig domain protein. (741 aa)    
Predicted Functional Partners:
CSCA_3162
Putative cell wall binding repeat 2-containing protein.
 
   
0.832
CSCA_4781
Glycosyltransferase.
  
     0.674
CSCA_3604
Membrane spanning protein.
  
     0.672
CSCA_0547
Ig domain protein group 2 domain protein.
  
  
0.534
CSCA_4117
Metal dependent phosphohydrolase.
  
     0.499
CSCA_3160
Ig domain protein.
       0.479
CSCA_3603
ABC transporter related protein.
  
     0.469
CSCA_4789
Oxidoreductase domain protein.
 
    0.457
CSCA_4358
Hypothetical protein.
  
     0.439
CSCA_3163
Hypothetical protein.
       0.436
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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