Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3169Glycosyl transferase-like protein. (345 aa)    
Predicted Functional Partners:
CSCA_3176
Pseudaminic acid synthase.
 
 
 0.973
CSCA_3185
Acylneuraminate cytidylyltransferase.
 
  
 0.953
CSCA_3170
Polysaccharide biosynthesis protein CapD.
 
   
 0.935
CSCA_3168
NAD-dependent epimerase/dehydratase.
 
    0.888
CSCA_2663
DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.808
CSCA_3180
MaoC-like dehydratase.
 
  
 0.789
CSCA_4715
Putative uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.786
CSCA_3187
Protein of unknown function DUF115.
 
   
 0.698
CSCA_2664
DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.589
CSCA_4780
Polysaccharide biosynthesis protein CapD.
 
   
 0.500
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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