Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CSCA_3189 | CSCA_3190 | CSCA_3189 | CSCA_3190 | Hypothetical protein. | Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.826 |
| CSCA_3189 | CSCA_3191 | CSCA_3189 | CSCA_3191 | Hypothetical protein. | Flagellar protein FliS. | 0.699 |
| CSCA_3189 | CSCA_3192 | CSCA_3189 | CSCA_3192 | Hypothetical protein. | Hypothetical protein. | 0.431 |
| CSCA_3189 | CSCA_3193 | CSCA_3189 | CSCA_3193 | Hypothetical protein. | Flagellin. | 0.546 |
| CSCA_3189 | CSCA_3196 | CSCA_3189 | CSCA_3196 | Hypothetical protein. | Flagellar hook-associated protein 3. | 0.478 |
| CSCA_3189 | CSCA_3197 | CSCA_3189 | CSCA_3197 | Hypothetical protein. | Flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family. | 0.456 |
| CSCA_3189 | CSCA_3198 | CSCA_3189 | CSCA_3198 | Hypothetical protein. | FlgN family protein. | 0.434 |
| CSCA_3189 | csrA | CSCA_3189 | CSCA_3194 | Hypothetical protein. | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.527 |
| CSCA_3189 | fliW | CSCA_3189 | CSCA_3195 | Hypothetical protein. | Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.492 |
| CSCA_3190 | CSCA_3189 | CSCA_3190 | CSCA_3189 | Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Hypothetical protein. | 0.826 |
| CSCA_3190 | CSCA_3191 | CSCA_3190 | CSCA_3191 | Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar protein FliS. | 0.989 |
| CSCA_3190 | CSCA_3192 | CSCA_3190 | CSCA_3192 | Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Hypothetical protein. | 0.582 |
| CSCA_3190 | CSCA_3193 | CSCA_3190 | CSCA_3193 | Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellin. | 0.955 |
| CSCA_3190 | CSCA_3196 | CSCA_3190 | CSCA_3196 | Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar hook-associated protein 3. | 0.972 |
| CSCA_3190 | CSCA_3197 | CSCA_3190 | CSCA_3197 | Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family. | 0.973 |
| CSCA_3190 | CSCA_3198 | CSCA_3190 | CSCA_3198 | Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | FlgN family protein. | 0.475 |
| CSCA_3190 | CSCA_3199 | CSCA_3190 | CSCA_3199 | Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Anti-sigma-28 factor, FlgM. | 0.875 |
| CSCA_3190 | csrA | CSCA_3190 | CSCA_3194 | Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.852 |
| CSCA_3190 | fliW | CSCA_3190 | CSCA_3195 | Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.945 |
| CSCA_3191 | CSCA_3189 | CSCA_3191 | CSCA_3189 | Flagellar protein FliS. | Hypothetical protein. | 0.699 |
page 1 of 6