STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3239Hypothetical protein. (152 aa)    
Predicted Functional Partners:
CSCA_3238
Radical SAM domain protein.
 
     0.959
CSCA_3240
Methyltransferase domain protein.
 
     0.959
CSCA_3241
Hypothetical protein.
 
     0.959
CSCA_3237
Hypothetical protein.
 
     0.957
CSCA_3235
Metal dependent phosphohydrolase.
 
     0.951
CSCA_3242
Pyridine nucleotide-disulfide oxidoreductase.
 
     0.951
CSCA_3236
Protein of unknown function DUF182.
 
     0.909
CSCA_3234
Phosphoglycerate mutase.
 
     0.899
CSCA_3243
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
 
     0.891
CSCA_3233
GAF modulated sigma54 specific transcriptional regulator, Fis family.
       0.723
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.