Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_3245Response regulator receiver domain protein. (127 aa)    
Predicted Functional Partners:
CSCA_3200
CheC, inhibitor of MCP methylation / FliN fusion protein.
  
 0.975
CSCA_1760
Multi-sensor hybrid histidine kinase.
 
 
 0.960
CSCA_3574
PAS domain S-box domain-containing protein.
 
 
 0.948
CSCA_5320
CheC-like family protein.
   
 0.943
CSCA_3204
CheC, inhibitor of MCP methylation.
  
 
 0.935
CSCA_3205
CheA signal transduction histidine kinase.
 
 0.890
CSCA_0137
Putative chemotaxis protein CheA.
 
 0.886
CSCA_3209
CheW protein.
 
 0.876
CSCA_3202
CheW protein.
 
 0.872
CSCA_1238
Chemotaxis protein.
 
0.861
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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