Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_3255Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family. (356 aa)    
Predicted Functional Partners:
CSCA_3256
Uroporphyrinogen decarboxylase-like protein; Belongs to the uroporphyrinogen decarboxylase family.
 
    0.940
CSCA_5061
uroporphyrin-III C-methyltransferase.
  
 
 0.933
CSCA_1502
Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
  
  
 
0.918
CSCA_3254
Cobalamin B12-binding domain protein.
 
  
 0.916
CSCA_0286
Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
  
  
 
0.914
CSCA_3252
Ferredoxin-containing protein.
 
  
 0.913
CSCA_3253
Methyltransferase, MtaA/CmuA family; Belongs to the uroporphyrinogen decarboxylase family.
 
   
0.796
CSCA_3257
Cobalamin synthesis protein CobW.
 
    0.778
CSCA_1503
Methionine synthase B12-binding module cap domain protein.
  
 0.748
CSCA_5047
Ferredoxin.
 
  
 0.705
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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