Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3261Transcriptional regulator, LuxR family. (256 aa)    
Predicted Functional Partners:
CSCA_0502
Diguanylate cyclase (GGDEF) domain protein.
 
  
 0.545
CSCA_2406
Beta-lactamase domain-containing protein.
 
 
 
 0.511
CSCA_3278
Hypothetical protein.
 
 
 
 0.507
CSCA_2707
Hypothetical protein.
  
     0.501
CSCA_3312
Chloramphenicol acetyltransferase; This enzyme is an effector of chloramphenicol resistance in bacteria; Belongs to the chloramphenicol acetyltransferase family.
 
    0.472
CSCA_1938
Adenylyltransferase.
  
     0.470
CSCA_0024
Two component transcriptional regulator, LuxR family.
  
 
 0.465
CSCA_0027
Transcriptional regulator, LuxR family.
  
 
 0.465
CSCA_0197
Two component transcriptional regulator, LuxR family.
  
 
 0.465
CSCA_1430
Hypothetical protein.
  
     0.465
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.