STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3286Hypothetical protein. (175 aa)    
Predicted Functional Partners:
CSCA_3285
Hypothetical protein.
       0.533
CSCA_3426
Transcriptional regulator.
  
     0.527
CSCA_1913
Hypothetical protein.
  
     0.518
CSCA_0676
Isochorismatase hydrolase.
  
     0.514
CSCA_0651
Transcriptional regulator, MerR family.
  
     0.512
CSCA_1852
Hypothetical protein.
  
     0.486
CSCA_2117
Transcriptional regulator, MarR family.
  
     0.461
CSCA_1851
Hypothetical protein.
  
     0.457
CSCA_2308
Transcriptional regulator, MerR family.
  
     0.429
CSCA_3303
Hypothetical protein.
  
     0.425
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.