STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3333Hypothetical protein. (155 aa)    
Predicted Functional Partners:
CSCA_0098
Nitroreductase.
 
  
 0.727
CSCA_0090
Nitroreductase.
 
  
 0.724
CSCA_1852
Hypothetical protein.
  
     0.704
CSCA_2394
Transcriptional regulator, MerR family protein.
 
   
 0.691
CSCA_0721
Hypothetical protein.
 
  
 0.671
CSCA_1851
Hypothetical protein.
  
     0.664
CSCA_5170
Hypothetical protein.
 
     0.595
CSCA_3334
Intracellular protease, ThiJ/PfpI family.
 
  
 0.572
CSCA_0995
Transcriptional regulator, MerR family.
 
   
 0.570
CSCA_0811
NADH dehydrogenase (quinone).
  
  
 0.537
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.