Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3390YD repeat protein. (102 aa)    
Predicted Functional Partners:
CSCA_3389
Magnesium and cobalt transport protein CorA.
       0.762
CSCA_0105
Hypothetical protein.
   
    0.511
CSCA_3126
ATPase, P-type (transporting), HAD superfamily, subfamily IC.
   
  
 0.505
CSCA_3550
E1-E2 ATPase-associated domain protein.
   
  
 0.505
CSCA_3388
Hypothetical protein.
       0.493
CSCA_4405
FHA domain containing protein.
  
  
 0.488
CSCA_0104
Transcriptional regulator.
   
  
 0.484
CSCA_0106
Hypothetical protein.
   
    0.465
CSCA_2192
Conserved unknown protein.
  
 
 0.457
CSCA_0722
Hypothetical protein.
   
  
 0.443
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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