Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
CSCA_3392Transposase. (231 aa)    
Predicted Functional Partners:
CSCA_3391
Hypothetical protein.
       0.737
CSCA_3114
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
   
 
 0.697
CSCA_2431
FtsA-related protein.
   
 
 0.681
ftsA
Hypothetical protein; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
   
 
 0.681
CSCA_5272
Diol/glycerol dehydratase reactivating factor large subunit.
   
 
 0.681
CSCA_3393
Hypothetical protein.
       0.542
CSCA_0125
D-ornithine aminomutase.
   
 
 0.486
CSCA_4326
Glutamate mutase, MutL.
   
 
 0.486
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.483
CSCA_2652
Putative stage V sporulation protein D.
  
 
 0.446
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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