Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3395Hypothetical protein. (118 aa)    
Predicted Functional Partners:
CSCA_3394
Hypothetical protein.
       0.586
CSCA_4091
Hypothetical protein.
   
    0.491
CSCA_3396
Putative ABC transporter, permease protein.
       0.470
CSCA_1343
Hypothetical protein.
  
 
 0.459
CSCA_2260
Hypothetical protein.
  
 
 0.459
CSCA_3493
Lipolytic protein G-D-S-L family.
  
 
 0.459
CSCA_1174
Hypothetical protein.
  
    0.441
CSCA_2420
Spore coat assembly protein SafA.
  
    0.431
CSCA_5219
Phage protein.
  
    0.431
CSCA_3397
ABC transporter, ATP-binding protein.
       0.428
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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