Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_3397ABC transporter, ATP-binding protein. (302 aa)    
Predicted Functional Partners:
CSCA_4662
ABC-2 type transporter.
  
 0.899
CSCA_3396
Putative ABC transporter, permease protein.
 
  
 0.872
CSCA_3398
DNA-binding protein.
     
 0.839
CSCA_2557
Microtubule-severing ATPase; Belongs to the AAA ATPase family.
  
 
 0.587
CSCA_0693
valyl-tRNA synthetase.
  
 
   0.584
CSCA_0183
Hypothetical protein.
  
 
 0.523
CSCA_3604
Membrane spanning protein.
  
 
 0.486
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.482
CSCA_1566
Hypothetical protein.
  
 
 0.482
CSCA_1981
ABC-2 type transporter.
  
 
 0.479
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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