Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSCA_3525Hypothetical protein. (691 aa)    
Predicted Functional Partners:
ybeY
Metalloprotein, YbeY/ UPF0054family; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
  
 0.890
CSCA_3522
Diacylglycerol kinase.
 
     0.825
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.587
CSCA_3524
7TM-HD extracellular.
       0.572
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.571
dacA
Protein of unknown function DUF147; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.543
CSCA_2838
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
     0.493
CSCA_3519
Ubiquitin-associated-domain-containing protein.
       0.479
CSCA_3527
Sporulation protein YqfC.
 
     0.424
CSCA_3852
CinA domain protein; Belongs to the CinA family.
       0.415
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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