Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3527Sporulation protein YqfC. (94 aa)    
Predicted Functional Partners:
CSCA_3526
Sporulation protein YqfD.
 
  
 0.995
CSCA_3079
Stage III sporulation protein AB.
  
  
 0.856
CSCA_3077
Stage III sporulation protein AD.
  
  
 0.838
CSCA_2982
Stage II sporulation protein M.
  
   
 0.822
CSCA_2822
Sporulation integral membrane protein YlbJ.
 
   
 0.818
CSCA_3076
Stage III sporulation protein AE.
  
  
 0.783
CSCA_3080
Stage III sporulation protein AA.
  
   
 0.746
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
 
     0.733
CSCA_3906
Sporulation transcriptional regulator SpoIIID.
  
  
 0.723
CSCA_3563
Spore germination protein.
  
     0.714
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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