Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3547Hypothetical protein. (284 aa)    
Predicted Functional Partners:
CSCA_3546
Glycosyltransferase.
 
     0.865
CSCA_3545
Hypothetical protein.
 
     0.846
CSCA_4712
Hypothetical protein.
  
     0.708
CSCA_0884
Hypothetical protein.
  
     0.701
CSCA_5219
Phage protein.
  
     0.698
CSCA_5217
Phage-like protein.
  
     0.690
CSCA_5218
Hypothetical protein.
  
     0.688
CSCA_3551
Glycosyl transferase family 2.
 
     0.642
CSCA_0582
Protein of unknown function CGGC region.
  
     0.636
CSCA_4070
Hypothetical protein.
  
     0.617
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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