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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3550E1-E2 ATPase-associated domain protein. (865 aa)    
Predicted Functional Partners:
CSCA_3549
ComEC/Rec2-related protein.
  
    0.752
CSCA_1639
MgtC/SapB transporter.
  
 
 0.663
CSCA_3548
DNA polymerase III, delta subunit.
       0.648
CSCA_3551
Glycosyl transferase family 2.
  
 
 0.591
CSCA_2961
Calcium/proton antiporter, CaCA family; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.
 
  
 
 0.532
CSCA_2455
Peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.
   
 0.529
CSCA_4419
Pyruvate kinase; Belongs to the pyruvate kinase family.
 
  
 0.521
CSCA_2454
Beta-lactamase domain protein.
 
 
 0.518
CSCA_0053
Beta-lactamase domain protein.
 
 
 0.489
CSCA_2698
Phage protein.
   
  
 0.485
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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