Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3561Germination protein, Ger(x)C family. (375 aa)    
Predicted Functional Partners:
CSCA_3563
Spore germination protein.
 
  
 0.949
CSCA_3560
Spore germination protein.
 
  
 0.932
CSCA_3564
GerA spore germination protein.
 
  
 0.920
CSCA_0902
GerKB3.
 
  
 0.846
CSCA_3946
Spore germination protein.
 
  
 0.757
CSCA_3942
Germination protein YpeB.
 
   
 0.702
CSCA_3562
Germination protein, Ger(x)C family.
 
    
0.690
CSCA_3947
GerA spore germination protein.
 
  
 0.646
CSCA_0482
Hypothetical protein.
  
     0.629
CSCA_4651
Extracellular solute-binding protein family 1.
  
     0.617
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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