Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSCA_3564GerA spore germination protein. (497 aa)    
Predicted Functional Partners:
CSCA_3563
Spore germination protein.
 
  
 0.942
CSCA_3561
Germination protein, Ger(x)C family.
 
  
 0.920
CSCA_3562
Germination protein, Ger(x)C family.
 
  
 0.919
CSCA_3560
Spore germination protein.
 
  
 0.863
CSCA_3945
Germination protein, Ger(x)C family.
 
  
 0.835
CSCA_1059
Spore germination protein.
 
  
 0.827
CSCA_2479
Stage V sporulation protein AD.
  
  
 0.812
CSCA_2480
Stage V sporulation protein AC.
  
  
 0.791
CSCA_2478
Stage V sporulation protein AE.
  
  
 0.788
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.787
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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