STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3565Formylmethanofuran dehydrogenase subunit E region. (174 aa)    
Predicted Functional Partners:
CSCA_0539
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
  0.948
CSCA_1153
Carbon-monoxide dehydrogenase, catalytic subunit.
  
  
  0.946
CSCA_4539
Carbon-monoxide dehydrogenase, catalytic subunit.
  
  
  0.944
CSCA_1513
Carbon-monoxide dehydrogenase, catalytic subunit.
  
  
  0.920
CSCA_0253
Anaerobic dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
  0.918
CSCA_1515
4Fe-4S ferredoxin iron-sulfur binding domain protein.
    
  0.901
CSCA_2752
4Fe-4S ferredoxin iron-sulfur binding domain protein.
    
  0.901
CSCA_2582
Formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
  0.900
CSCA_3645
Carbon-monoxide dehydrogenase, catalytic subunit.
     
  0.900
CSCA_4944
Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
  0.900
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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