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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3585ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein. (483 aa)    
Predicted Functional Partners:
CSCA_3584
Two component transcriptional regulator, winged helix family.
 
   0.969
CSCA_2226
Two component transcriptional regulator, winged helix family.
 
   0.734
CSCA_1800
Two component transcriptional regulator, winged helix family.
 
   0.699
CSCA_0184
Two component transcriptional regulator, winged helix family.
 
   0.680
CSCA_1278
Two component transcriptional regulator, winged helix family.
 
   0.677
CSCA_0433
Two component transcriptional regulator, winged helix family.
   0.670
CSCA_0498
Two component transcriptional regulator, winged helix family.
 
   0.669
CSCA_3606
Two component transcriptional regulator, winged helix family.
 
   0.665
CSCA_3463
Hypothetical protein.
 
   0.660
CSCA_1159
Two component transcriptional regulator, winged helix family.
 
   0.653
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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