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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3587Diguanylate phosphodiesterase. (402 aa)    
Predicted Functional Partners:
CSCA_4382
Signal transduction protein.
 
   
 0.713
CSCA_3138
Bifunctional flagellar biosynthesis proteins FliR/FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
 
     0.592
CSCA_3890
Hypothetical protein.
 
     0.566
CSCA_1824
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
   
 0.526
CSCA_1254
Response regulator receiver modulated CheW protein.
 
     0.466
CSCA_4038
MotA/TolQ/ExbB proton channel.
 
     0.459
CSCA_2233
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
   
 0.456
CSCA_3154
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
     0.428
CSCA_5313
Diguanylate cyclase/phosphodiesterase.
 
   
 0.412
CSCA_3586
Methyl-accepting chemotaxis sensory transducer.
       0.406
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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