Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3641RNA binding S1 domain protein; Belongs to the CvfB family. (289 aa)    
Predicted Functional Partners:
CSCA_3640
Beta-lactamase domain protein.
  
    0.554
CSCA_3642
ADP-ribosyl-(dinitrogen reductase) hydrolase.
       0.550
CSCA_3940
Protein of unknown function DUF1934.
   
    0.533
CSCA_3643
Hypothetical protein.
       0.523
ppnP
Protein of unknown function DUF1255; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
 
     0.475
CSCA_2801
GTP1/OBG protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
 
  
 0.470
CSCA_4419
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
    0.435
CSCA_1498
ATP-dependent DNA helicase RecQ.
       0.415
CSCA_3852
CinA domain protein; Belongs to the CinA family.
       0.415
CSCA_1306
Protein of unknown function DUF441.
  
    0.408
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.