Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3876Hypothetical protein. (203 aa)    
Predicted Functional Partners:
CSCA_2474
ABC transporter related protein.
   
    0.928
glmS
Methylaspartate mutase, S subunit; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).
  
 
 0.859
CSCA_5291
Cobalamin B12-binding domain protein.
  
 
 0.859
CSCA_2476
ABC transporter.
  
  
 0.842
CSCA_0668
Fe3+ ABC superfamily ATP binding cassette transporter, membrane protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
   
  
 0.806
CSCA_2475
Iron chelate uptake ABC transporter, FeCT family, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
   
  
 0.806
CSCA_3766
Transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
   
  
 0.806
CSCA_5290
methylmalonyl-CoA mutase, large subunit.
  
 
 0.806
CSCA_4774
Pyruvate ferredoxin/flavodoxin oxidoreductase.
  
  
 0.744
CSCA_0543
Metal ion (Fe 3+) ABC transporter ATPase.
  
  
 0.630
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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