Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3899Hypothetical protein. (218 aa)    
Predicted Functional Partners:
CSCA_3900
Hypothetical protein.
  
  
 0.955
CSCA_1292
Hypothetical protein.
  
  
 0.937
CSCA_2795
DNA protecting protein DprA.
 
 
 0.885
CSCA_3549
ComEC/Rec2-related protein.
 
  
 0.870
CSCA_3731
DNA protecting protein DprA.
 
 
 0.860
CSCA_3732
DNA protecting protein DprA.
  
 
 0.834
recD2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.829
CSCA_2798
Mg chelatase, subunit ChlI.
 
  
 0.825
CSCA_3733
Mg chelatase, subunit ChlI.
 
  
 0.817
CSCA_3154
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.781
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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