Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_3900Hypothetical protein. (338 aa)    
Predicted Functional Partners:
CSCA_3899
Hypothetical protein.
  
  
 0.955
CSCA_3093
Hypothetical protein.
   
  
 0.907
CSCA_3092
Type II secretion system protein.
   
  
 0.855
CSCA_4985
Competence protein ComEA helix-hairpin-helix repeat protein.
   
  
 0.851
recD2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.829
CSCA_1292
Hypothetical protein.
  
  
 0.701
CSCA_4604
Peptidase A24A domain protein.
   
  
 0.684
CSCA_3088
Hypothetical protein.
   
  
 0.641
CSCA_3089
Hypothetical protein.
   
  
 0.641
CSCA_3091
Prepilin-type cleavage/methylation.
   
  
 0.641
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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