Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_3945Germination protein, Ger(x)C family. (388 aa)    
Predicted Functional Partners:
CSCA_3946
Spore germination protein.
 
  
 0.968
CSCA_3947
GerA spore germination protein.
 
  
 0.958
CSCA_3944
Stage II sporulation protein R.
 
   
 0.851
CSCA_3564
GerA spore germination protein.
 
  
 0.835
CSCA_1058
Spore germination protein.
 
  
 0.829
CSCA_3563
Spore germination protein.
 
  
 0.810
CSCA_3560
Spore germination protein.
 
  
 0.808
CSCA_1062
Spore germination protein KB.
 
  
 0.801
CSCA_1061
Spore germination protein KB.
 
  
 0.798
CSCA_0902
GerKB3.
 
  
 0.795
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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