Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CSCA_3953Protein of unknown function DUF1021. (78 aa)    
Predicted Functional Partners:
CSCA_4220
Purine operon repressor, PurR.
 
     0.635
CSCA_3954
Sporulation peptidase YabG.
       0.596
CSCA_4147
Hypothetical protein.
   
    0.590
CSCA_3952
Hypothetical protein.
     
 0.567
CSCA_3955
Spore coat protein, CotS family.
 
     0.565
CSCA_4148
Phosphoesterase RecJ domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
 
    0.552
CSCA_3956
Glycosyl transferase group 1.
       0.431
CSCA_3829
Transcriptional regulator, DeoR family.
  
     0.430
CSCA_4008
3D domain protein.
       0.415
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.415
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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