Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_3989Hypothetical protein. (582 aa)    
Predicted Functional Partners:
CSCA_3830
RNA polymerase sigma-54 factor.
 
  
 0.825
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.546
CSCA_4803
Class II glutamine amidotransferase.
     
 0.499
CSCA_3990
Hypothetical protein.
       0.498
CSCA_0875
Diguanylate cyclase (GGDEF) domain protein.
     
 0.493
CSCA_2676
Pyridine nucleotide-disulfide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.478
CSCA_1760
Multi-sensor hybrid histidine kinase.
     
 0.454
CSCA_4161
Protein of unknown function DUF299; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.
  
  
 0.434
CSCA_3987
Respiratory-chain NADH dehydrogenase domain 51 kDa subunit.
     
 0.427
CSCA_3986
PrdA domain-containing protein.
     
 0.426
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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