Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSCA_4017Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase. (500 aa)    
Predicted Functional Partners:
CSCA_4714
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
    
  0.903
CSCA_4018
Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.
       0.538
CSCA_5121
CHAP domain containing protein.
  
 0.535
CSCA_3638
3D domain protein.
   
  
 0.532
CSCA_5254
Cell wall hydrolase/autolysin.
  
  
 0.529
CSCA_4008
3D domain protein.
   
  
 0.527
CSCA_4648
Abortive infection protein.
  
 
 
 0.472
CSCA_3191
Flagellar protein FliS.
   
    0.436
CSCA_1825
Protein of unknown function DUF1311.
  
     0.407
CSCA_3190
Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
   
    0.405
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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