Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_4040Hypothetical protein. (67 aa)    
Predicted Functional Partners:
CSCA_4041
PSP1 domain protein.
       0.821
CSCA_4042
DNA polymerase III, delta' subunit.
       0.821
CSCA_4043
Protein of unknown function DUF970.
  
    0.818
CSCA_4044
Hypothetical protein.
       0.686
CSCA_4045
Orn/Lys/Arg decarboxylase major region.
       0.686
CSCA_4046
Hypothetical protein.
       0.686
CSCA_4039
4Fe-4S ferredoxin iron-sulfur binding domain protein.
       0.674
CSCA_0946
Hypothetical protein.
  
 
 0.624
CSCA_0952
Cation transporter HAD ATPase.
  
 
 0.624
CSCA_0131
Cadmium-translocating P-type ATPase.
  
 
 0.621
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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